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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs2111504 1 rs4805758 chr19:32866424 DPY19L3 chr19:32896677-32975236:+ 0.2 5.53 5.41E-8 Bipolar disorder
THCA cis rs2111504 1 rs4805758 chr19:32866424 ZNF507 chr19:32836514-32878571:+ 0.32 8.11 4.16E-15 Bipolar disorder
THCA cis rs2111504 1 rs4805762 chr19:32963954 DPY19L3 chr19:32896677-32975236:+ 0.18 4.96 9.87E-7 Bipolar disorder
THCA cis rs2111504 1 rs4805762 chr19:32963954 ZNF507 chr19:32836514-32878571:+ 0.3 7.54 2.42E-13 Bipolar disorder
THCA cis rs4805834 1 rs4805834 chr19:33453659 SLC7A9 chr19:33321421-33360683:- -0.24 -3.59 0.000363 Creatinine levels
THCA cis rs477692 1 rs480643 chr10:131400308 MGMT chr10:131265454-131565783:+ 0.38 11.21 4.67E-26 Response to temozolomide
THCA cis rs732505 1 rs4807790 chr19:5584614 C19orf70 chr19:5678433-5680911:- -0.14 -3.56 0.000407 vWF and FVIII levels
THCA cis rs732505 1 rs4807790 chr19:5584614 NDUFA11 chr19:5891287-5904025:- -0.16 -3.61 0.000338 vWF and FVIII levels
THCA cis rs4808801 1 rs4808133 chr19:18608518 ELL chr19:18553475-18632937:- -0.26 -6.56 1.44E-10 Breast cancer
THCA cis rs4808801 1 rs4808133 chr19:18608518 ISYNA1 chr19:18545625-18548943:- 0.12 4.69 3.63E-6 Breast cancer
THCA cis rs4808801 1 rs4808133 chr19:18608518 LRRC25 chr19:18501955-18508421:- -0.13 -4.56 6.37E-6 Breast cancer
THCA cis rs4808801 1 rs4808134 chr19:18608579 ELL chr19:18553475-18632937:- -0.26 -6.56 1.44E-10 Breast cancer
THCA cis rs4808801 1 rs4808134 chr19:18608579 ISYNA1 chr19:18545625-18548943:- 0.12 4.69 3.63E-6 Breast cancer
THCA cis rs4808801 1 rs4808134 chr19:18608579 LRRC25 chr19:18501955-18508421:- -0.13 -4.56 6.37E-6 Breast cancer
THCA cis rs4808801 1 rs4808136 chr19:18618867 ELL chr19:18553475-18632937:- 0.27 6.88 1.83E-11 Breast cancer